NeuroInsight research platform

Automated Neuroimaging Workflows

NeuroInsight hosts reproducible neuroimaging workflows on your infrastructure—local-first, source-available research software. The first workflow is AutoHS (hippocampal asymmetry from T1-weighted MRI); more workflows are planned.

Research software only—not cleared or approved by the FDA as a medical device.

Workflow catalog—each pipeline ships as NeuroInsight-<Workflow>
Local processing for privacy-conscious research environments
Peer-reviewed methods—Brain Communications paper & software
L R

Hippocampal Regions with Automated Segmentation

Workflows on NeuroInsight

Each pipeline ships as NeuroInsight-<Workflow>. More workflows are planned.

Cited in Brain Communications (2026): publication, software & MATLAB scripts · DOI

Available now

AutoHS

Hippocampal volumetry and asymmetry index from T1-weighted MRI for epilepsy research and HS screening studies.

Workflow BIDS App (incoming)

How to run AutoHS

NeuroInsight-AutoHS

Web/desktop app · NIfTI upload · PDF reports

Download app

AutoHS workflow

BIDS App (incoming) CLI · cohorts & HPC

AutoHS quick start

More NeuroInsight workflows will be listed here as they are released.

AutoHS capabilities

What the first NeuroInsight-AutoHS application delivers (same core workflow as the AutoHS CLI).

FreeSurfer Integration

Industry-standard automated cortical reconstruction and subcortical segmentation for reliable hippocampal identification.

Volumetric Analysis

Precise measurement of left and right hippocampal volumes in mm³ with statistical reliability assessment.

Asymmetry Detection

Automated hippocampal asymmetry indices using thresholds described in the AutoHS publication for research screening.

Rapid Processing

Automated pipeline delivers results faster without manual intervention, typically completing analysis within hours.

What is NeuroInsight?

NeuroInsight hosts reproducible neuroimaging workflows on your infrastructure. Each workflow has a pipeline (e.g. AutoHS) and an application tool (NeuroInsight-AutoHS today).

Research software only—not FDA-cleared. For the published method, software links, and MATLAB scripts, see Research & publications.

AutoHS processing steps

As run in NeuroInsight-AutoHS and the AutoHS workflow

1

File Validation

T1-weighted MRI validation and format checking

2

FreeSurfer Segmentation

Automated cortical reconstruction and hippocampal ROI identification

3

Statistical Analysis

Volume measurements and asymmetry index calculations

4

Visualization & Reports

2D/3D brain visualization and PDF report generation

Contact

Questions about NeuroInsight, AutoHS, or this site—reach out via email or social links below.

Developed at the University of Rochester Medical Center. Get started: pick a workflow on the home catalog. Citing the paper or reproducing cohort analyses? See Research & publications.