Research & Publications

Publications describe the AutoHS workflow on the NeuroInsight platform. Cite the paper for the method; run the same method as the AutoHS workflow or the NeuroInsight-AutoHS application.

Published Research Paper

Peer Reviewed

MRI derived hippocampal asymmetry identifies hippocampal sclerosis in epilepsy surgical specimens

Ndagijimana P, Brennan D, Shinohara RT, Gugger JJ. Brain Communications. 2026;8(4):fcag320.

Describes the AutoHS hippocampal asymmetry workflow for research and surgical cohort validation. Implementations: AutoHS (pipeline) and NeuroInsight-AutoHS (application).

Paper analysis scripts (MATLAB, IDEAS cohort analyses cited in the publication) are hosted here: research/ideas_project_scripts.

Workflow

  • • AutoHS — hippocampal asymmetry from T1w MRI
  • • FreeSurfer-based segmentation pipeline
  • • Asymmetry index for HS research screening
  • • Local processing (research environments)

Software & scripts

AutoHS workflow (GitHub) NeuroInsight-AutoHS (download)
Read full paper (DOI) Independent validation (AutoHS)

Research software only—not FDA-cleared. Independent validation is encouraged; see AutoHS VALIDATION materials on GitHub.

To run AutoHS: workflow catalog on the home page · Methods & theory: AutoHS Read the Docs