DLSurfer and DKT Connectome¶
| DLSurfer | DKT Connectome | |
|---|---|---|
| Docs | phindagijimana.github.io/dlsurfer | dkt-connectome.readthedocs.io |
| Input | T1w ± lesion (explicit paths; BIDS stub) | BIDS DWI + T1w |
| Output | FreeSurfer SUBJECTS_DIR |
78-node DKT connectome (+ optional disconnectome) |
| BIDS App | Short of standard (status) | Full ./run bids out participant |
| Coupling | None — isolated package | May consume a finished SUBJECTS_DIR |
# Morphometry only (this repo)
dlsurfer run --profile core-lesion --t1 T1.nii.gz --lesion-mask L.nii.gz --sd SD --sid sub-01
# Connectomics (other repo) — after or instead of DLSurfer recon
./dkt run BIDS OUT participant --participant-label 01 --fastsurfer --syn
Print-only handoff notes: dlsurfer handoff --consumer dkt --sd SD --sid SID (does not run DKT).