Quality control

Check	How
Plan sanity	Dry-run first (dlsurfer run without --execute)
Doctor	dlsurfer doctor → [READY]
Step timing / exits	$SD/$SID/scripts/dlsurfer_metrics.tsv
Segmentation / surfaces	FreeView on $SD (upstream FS GUI)
Gates	dlsurfer gates — experimental profiles stay blocked
TopoFit machine + Chamfer	scripts/score_topofit_tbi_lit.py → machine_ok / qc_ok
TopoFit FreeView	work/phase3_topofit/freeview_topofit_qc.sh
Metrics vs SLURM	scripts/compare_metrics_slurm.py --metrics … --jobid …

Lesion arms: compare with-LIT vs no-LIT trees carefully; do not Jaccard non-homologous meshes across arms.

DKT Connectome cohort HTML / Step 5 PDFs are out of scope here — use that project’s QC pages after handoff.